Version 2.1 has just been released!
You can download the R package from CRAN:
http://cran.r-project.org/web/packages/PhyloMeasures/
The new version uses a novel technique, called Incremental Monte Carlo, that speeds up substantially null model computations for p-values and standardized indices. This technique can be used for speeding up all kinds of batched biodiversity computations (i.e. not only phylogenetic ones) that require maintaining species richness. A scientific article that describes the new technique is soon to be published.
You can download the R package from CRAN:
http://cran.r-project.org/web/packages/PhyloMeasures/
The new version uses a novel technique, called Incremental Monte Carlo, that speeds up substantially null model computations for p-values and standardized indices. This technique can be used for speeding up all kinds of batched biodiversity computations (i.e. not only phylogenetic ones) that require maintaining species richness. A scientific article that describes the new technique is soon to be published.